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Brain Observatory Notes

Software in use:

Scanning Planning ¶

• Brain Observatory Labview Planning
  

scanning software ¶

infomration we need to capture

• http://www.med.upenn.edu/cellbio/MicroscopyLinks.shtml
• http://en.wikipedia.org/wiki/Software_tools_for_molecular_microscopy
  

Matlab based solutions ¶

• scanimage done in matlab
• another matlab image processing
• scanimage 3.5 location
  

Software ¶

http://www.syncroscopy.com/syncroscopy/syncroscanapps.asp

• pdf listing open source solutions
  === Micromanager ===
• non main wiki notes
  === open miscrscopy ===
  http://www.openmicroscopy.org/site/downloads
  

virtual microscope ¶

• http://virtual.itg.uiuc.edu/downloads/
  

• http://www.mbfbioscience.com/stereo-investigator-features
• http://www.mbfbioscience.com/virtual-slice-module
  

http://www.mediacy.com/

http://www.objectiveimaging.com/ surveyour scanning system

http://www.dmetrix.net/products.shtml#instruments single shot system

misc ¶

http://support.svi.nl/wiki/ another site

• http://www.microscopy.com/
  

http://itk.org

Other software ¶

• BO File Sync
• BO Image Processing
• scidb image catalog software
  

image stiching

• http://www.paxit.com/paxit/processing.asp
• http://research.microsoft.com/en-us/um/redmond/groups/ivm/ICE/
  

== so